Chapter 9 - Great Bay Temple
This part of the Legend of Zelda: Majora's Mask walkthrough covers the third dungeon of the game, the Great Bay Temple.

Majora's Mask - Walkthrough Index

Chapter 1) First Three Days
Chapter 2) Southern Swamp
Chapter 3) Woodfall Temple
Chapter 4) Collection
Chapter 5) Snowhead
Chapter 6) Snowhead Temple
Chapter 7) Spring, Ranch, Graveyard
Chapter 8) Great Bay & Zora Cape
Chapter 10) Ikana Canyon
Chapter 11) Well & Ikana Castle
Chapter 12) Stone Tower Temple
Chapter 13) The Moon

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9.1 Small Key
Total Life

Pieces of Heart
31/52
Items:
??????
New Enemies:
??????

Entrance (A)
As you enter, Link will wave at the giant turtle and we'll regain control of our hero. If you want to leave at any point during the dungeon, simply Hookshot onto his back again. I mentioned this before we entered but, you may want at least one bottle of Green Potion (Magic Hags' Potion Shop in Southern Swamp or Trading Post in Clock Town) as well as a Fairy or two (next to any owl statue or inside the crates in this room).

In this first area, you can smash the crates nearby for Arrows, Magic, Bombs and a Fairy. You'll notice there are four unlit torches on the upper ledges. Light a Deku Stick on the lower torches and use it to light all of the unlit ones (or just shoot them all with Fire Arrows). Once all of them are aflame, a large chest will appear containing the first Stray Fairy. That's all we can do here, so enter the door.

#1 Light all of the unlit torches.

Waterwheel Room (B)
As you enter, Tatl will point out the big waterwheel. Craziness. First, slap on the Zora Mask and swim to the other side of the room. There is a yellow platform under the water in the far corner with a switch on it. Sink down with B and push/pull it, causing it to disappear. This will allow the water to continue flowing through this particular YELLOW pipe and create a "water platform" of sorts that we will use in a moment. Turn around and head back towards the door you entered from.

Just underneath the platform, swim through (or hit with your blades) the bubble and snag your second Stray Fairy. There are two platforms that are going up and down. Get on the right one (when facing the door) which takes you up to a platform with Rupees and a Big Skulltula, which you can defeat to get your third Stray Fairy. Jump down and take the opposite one up to get to a platform with two Big Skulltulas. Defeat them if you wish, then jump on the yellow water pump when it's low, then jump to the higher platform across from you when it rises. Round the corner and go through the small hallway.

Did you know?
This dungeon is filled with pipes. If they pulse, they have water flowing through them. If they don't pulse, then you need to track down the switch that is blocking the water flow. In this way, you can figure out where to go.

#2 Trapped in a bubble under the platform.
#3 Take the rising platform up to a Big Skulltula and kill it.

Central Chamber (C)
Man, this room is massive! As you'll notice, there's only a few areas we can go to in here at the moment. We'll need the water to go the opposite direction in order to access the others. For now, jump on the rotating platform and use it to get to the side platforms with the barrels. Roll into them to find your fourth Stray Fairy. Hop down to the lower platform next to the water, then look down. In the center of the spinning vortex of water, on the floor in middle is a lone jar. Shoot it with an arrow to release the fifth Stray Fairy and wear the Great Fairy Mask to make it come to you. Alternatively, you can sink down and hit it with your Double Cutters, then try to swim into it (much harder in my opinion).

Put on the Zora Mask and jump in the water. Following the flow of the water, you'll notice there's only two areas we can go into at the moment. Swim through the upper YELLOW colored path.

#4 Smash the barrels on the west side.
#5 Stand on solid ground and shoot an arrow at the jar in the center of the spinning water at the bottom, then wear the Great Fairy Mask.

Dungeon Map Room (?)
This room has several Skullfish that you can kill easily by pressing the button ( + when standing on the ground). Float up to the surface and climb onto the lowest ledge. Turn around and use the Hookshot to grapple onto the chest and open it to get the Dungeon Map. You'll notice a door on an opposing platform, but we can't get there at the moment. Instead, sink down to the bottom where you'll see the next opening has a new enemy guarding it: Dexihands. They won't actually hurt you, but they'll prevent you from going through. Either charge up some Double Cutters or swim through them and hold to kill them instantly. Swim through the GREEN path.

After rounding the corner, you'll find yourself in a small hallway with another new enemy you may have seen once before: Bio Deku Babas. These things are much like regular Deku Babas, but they'll break off their stem and walk around, jumping at you if you get close. Worse, they're quite agile underwater. Nasty little things. Kill all of the ones hanging upside-down, (stand under them and press + ,) then hop along the lily pads to reach the far platform. Kill the last one to make a large chest appear containing the sixth Stray Fairy. Enter the door.

#6 Kill all of the Bio Deku Babas in this room.

Room (?)
See that chest on the opposite side of this room? Yeah, shoot an Arrow at the Real Bombchu next to the chest to blow it up. Next, Z target the Bio Deku Babas under the lily pads and shoot them with Arrows too. Put on the Zora Mask (so you're taller) and jump across the lily pads and to the platform. Pull yourself up and open the chest to get the Compass.

Sink down to the bottom of the water here and defeat the Bio Deku Babas we sliced down as well as the Dexihand. Break the jars to recover Arrows and Magic, then open the chest to get a Small Key. Float back up to the surface and climb out of the water. There's some Dexihands in the flowing water here next to the door. Shoot the jar between them with an Arrow to find the seventh Stray Fairy. Either wear the Great Fairy Mask or hop in, allowing the Dexihands to shake you into it before they toss you out of the water. Once you have it, hop into the flowing water to be taken back to the main room.

#7 In a jar between two Dexihands in the flowing water.
9.2 Ice Arrows
Total Life

Pieces of Heart
31/52
Items:
??????
New Enemies:
??????

Room (?)
This time, swim through the lower RED path.

Room (?)
Ignore the Shell Blades and Skullfish. Float up to the surface, where you'll encounter a new enemy called an Octorok. Ignore them for now as well. Find the RED pipe and climb on top of it out of the water. I recommend shooting the Real Bombchu with an Arrow. Follow the pipe to the locked door and go through.

This room contains nothing but Green Chus and, a new variety we've yet to see, Yellow Chus, which drop Arrows when defeated. Stock up on Arrows and Magic, then head through the door. Look up at the ceiling to initiate the mini-boss battle.


.
Wart
Tatl:
It's a Wart.
Once you've gotten rid of the
spheres that shield the main body,
you can attack the eye.
Attacks:
  Orbs
  Ram
Threat:
Received:
  - Ice Arrows

This creature is quite simply a giant eyeball that can only be damaged when it's eyelid is open. It's very similar to Arrghus from A Link To The Past and Deku Toad from Twilight Princess.

The main eye can be damaged with just about anything (when it's open), however, this thing obviously doesn't just float around... After several hits, it will drop all the pink things surrounding it and zoom around the room, ramming the walls repeatedly in an attempt to squish you. If you have a lot of pink things still remaining, it can make this very difficult to complete without taking a lot of damage.

Now rewind. At the start of the battle, it surrounds itself with those pink thingies. You can get them off by hitting them with just about anything, but Deku Nuts, Fire Arrows or Bombs work the best. They will then bounce around, at which point you can kill them with your sword. Utlizing the Quick Spin (rotate the Analog Stick in a full circle and press ) can make this much easier!

That being said, here are my recommended best strategies for removing the pink orbs:
 - Put on the Blast Mask and hold a Bomb over your head. Toss it into the middle of the eye (so it lands directly below it) shortly before it explodes. This will make the max number of orbs come after you. Hold in your shield and press B to explode, not taking damage, but killing loads of them all at once. This gets my vote for the easiest method.
 - Use Fire Arrows or Deku Nuts to make a bunch fall off, then use Quick Spins (rotate the Analog Stick in a full circle and press ) repeatedly.
 - Use the Hookshot to take off one at a time and slash it with your sword. Easy and safe, but slow.

Once there aren't many pink floaties remaining, (or you run out of patience,) hit the main eye with Arrows or your Hookshot. Once it falls down, run away and kill the pink things if you wish, then target the eye. Get an Arrow ready and loose whenever it's facing your direction and the eye is exposed.
 
Summary:
Use Bombs, Fire Arrows and Deku Nuts to remove the outer layers of gooey pink things. Kill then with the Blast Mask and Quick Spins. After they're gone, shoot the eye with Arrows. Don't let it ram you, keep shooting it with Arrows.
 
After you've defeated Wart (who wasn't... hard as much as annoying and drawn out...) open the chest to find the Ice Arrows. The plot thickens! Exit this room as well as the next after stocking up on resources again.


9.3 Red Switches
Total Life

Pieces of Heart
31/52
Items:
??????
New Enemies:
??????


First Red Switch - Room (?)
If you could somehow step on
top of that Octorok, I bet you'd
be able to climb onto that central
pillar.
With the first Mini-Boss defeated and Ice Arrows in hand, return to the room with the Red Pipes just outside the chamber where we fought Wart and head to one of the two platforms in the southern corners of the room. There is an Octorok at each of them, and as you stand on the platform itself, Tatl will wish to point out something interesting... Shoot the Octorok with an Ice Arrow to freeze it into a solid block temporarily, allowing you to climb up and reach the central platform. Do so and push/pull the giant RED switch to let the water flow through the pipes. Let's follow them, shall we? Head back to the main room.

Second Red Switch - Room (?)
In the central chamber, swim back through the upper YELLOW colored opening, where you can see the RED pipe is now flowing into. This takes you to a familiar room we've been in before. Float up to the surface and climb up on the platform on your left. Use your Hookshot to reach the chest (and open it if you haven't already). Next, face towards the smaller platform on the opposite side with the two jars. Slap on the Deku Mask, hop over to it and spin into the jars to find the eighth Stray Fairy.

Look at the RED pipes in this room. It enters the nearby door we were unable to access earlier and comes out not flowing. Let's fix that, shall we? Now that we have the Ice Arrows, we can use them to shoot the water surface, creating temporary icy platforms. I recommend jumping to Ice Platforms while wearing the Deku Mask so you can hop on the water. That being said, shoot an Ice Arrow fairly close to the southern platform, put on the Deku Mask to hop over to it, then take off the Deku Mask, jump and climb atop the platform, then enter the door.

Hey, how do you get up there?
I don't see anything to climb on!
What can we use? There's really
nothing here besides that jiggly
blob.
In this small room, you'll see a new variation of an old enemy. This Blue ChuChu does not drop any goodies when defeated, however, it can be frozen with an Ice Arrow to form a temporary block. Lure it over to the upper platform and shoot it, then push/pull it if you need it any closer. Use it to get on top of the red platform, then hold to defend, waiting for the Real Bombchu to commit suicide against your shield. Push/Pull this second RED switch to allow the water to continue flowing through the RED pipes. Smash the crates if you like and exit the door.

The Boss Key (?)
Hop in the water and swim through the GREEN path, following the RED pipes which are now flowing, following them into the next area and out the door. This takes us to the room where we got the Compass earlier. You'll notice, across the water is a hallway we couldn't reach before. Put those Ice Arrows to use and make a path to it, using the Deku Mask to jump from platform to platform, then wearing the Zora Mask (for added height) to jump to the alcove if you're worried about it. Inside, use a Fire Arrow on the ice chunk blocking the door, then slash the ice stalagmites to recover Arrows and Magic. When you're ready, enter the door to confront the next mini-boss.
Gekko (Again)
Tatl:
He's run inside a Mad Jelly
Since its body is so soft, normal
attacks won't do any good! Figure
out another way!
Attacks:
  Mad Jelly
  Jelly Barrage
Threat:
Received:
  - Boss Key

Him again? Yes, and he has new friends. These blobs called Mad Jellies are a unique "enemy" are only found in this battle and they will hop towards you when you get near them, similar to ChuChus. They cannot be defeated, but you can defend against them with your shield as well as toss them away by slashing your sword. Make good use of Quick Spins (rotate the Analog Stick and press ) to get rid of all the ones surrounding you easily.

The goal of this battle is to chase down Gekko, who runs around the room and tosses Mad Jellies at you. Just swerve to avoid them, or slash them with your sword like tennis to send them flying. I recommend using the Bunny Hood to hasten the pursuit. Once you get close enough, smack him with your trusty blade.

Gekko will then jump up to the ceiling along with all of the Mad Jellies, which combine to form a giant gooey blob. When you regain control, you'll see it's shadow on the floor, which comes close to you and quivers (getting ready to fall). Quickly run away from it, (I recommend using either the Bunny Hood or Goron Mask if you have troubles with this), otherwise it'll stick to you and pull you in, allowing Gekko to deal loads of damage to you.

As you've probably already guessed, these globs are made of water, so the natural conclusion is to use Ice Arrows. Shooting it on the floor or in the middle of the elevation will have no effect, so wait for him to fully be on the ceiling so that it falls to the floor and shatters. If you have trouble doing this, simply wait for the blob to come down on purpose, (run away of course,) then turn around and target Gekko. As he's getting back on the ceiling, prepare an Ice Arrow and release once all of the jelly-ness is on the ceiling.

When you successfully freeze him, run over and stand just outside the shadow on the floor. Once it hits the ground, quickly run after Gekko, avoiding the Mad Jellies as you go. Slash him and repeat this process until he's defeated.
 
Summary:
Slash the Mad Jellies (Quick Spin) if they get in your way. Chase down Gekko and skin him alive. When the blobs combine, run far away from the shadow on the floor, then turn around and target Gekko. Shoot an Ice Arrow at him when he's fully on the ceiling. Repeat.
 

After the punk dies, he'll revert back into a normal frog. If you have the Don Gero Mask, put it on and speak with the frog to make it disappear. This will allow us to get a Piece of Heart after the dungeon. Enter the new door on the left which leads to a small blocked off area in the previous room. Open the large chest to find the Boss Key. To get out of this golden gate area, either use your Hookshot or climb over it. Put on the Zora Mask and use the flowing water to get back to the main room.



9.4 Going The Other Way (Green)
Total Life

Pieces of Heart
31/52
Items:
??????
New Enemies:
??????


Changing The Waterflow
In the central room of the dungeon, float up to the surface and climb onto the platform. Climb up the ladder and work your way back towards the entrance (south). Once you're back in the room just after the entrance with the giant waterwheel that Tatl pointed out initially, turn to the right and you'll see the red pipes flow all the way back here and form another one of those water-pump-elevators. Hookshot to the target directly above it, then wait for it to be raised and jump to the RED platform. Push/Pull it to allow water to flow into the waterwheel, causing it to stop moving entirely. Jump down into the water and swim over to the YELLOW platform, then Push/Pull that one to shut off the waterflow from the YELLOW pipes. This will allow the waterwheel to move again, but in the opposite direction. Return to the main room.

First Green Switch - Behind The Waterfall (?)
So now water is flowing through both the YELLOW and RED pipes. If you glance around the room, the only one left that is not flowing is the GREEN pipes. Following the pointing arrows (on pipe itself) backwards, you'll see they originate to the north of this very room. Hop on the rotating paddles and use them to get to the north side of the central room, where you'll find a waterfall blocking a ladder. Shoot it with an Ice Arrow to freeze it, then climb up the ladder and enter the green shaded door.

First of all, I recommend you kill the enemies in this room. Lure the Blue Tektite over and slash it with your sword. Next, from the entrance to this room, shoot an Ice Arrow or two into the water near the YELLOW platform. Use the Deku Mask to hop over to it, then put on the Zora Mask (for added height) and jump up to it. Kill the second Blue Tektite with arrows if you haven't already, then look up. You'll see this room has grating above it, but there are holes that lead to an upper area.

From the YELLOW platform, shoot an Ice Arrow to the far north. Use the Deku Mask to hop over to it. Now, shoot another Ice Arrow fairly close to the northern wall. Hop to it, turn around and now you should be far enough back that you can use the Hookshot on the target above. Do so to get to the upper area and open the large chest in the middle to find your ninth Stray Fairy. There's two Red Rupees you can get, but I recommend only snagging the far southern one, since the other requires a bit of swimming.

Now for the GREEN platform. From either the YELLOW platform or the entrance, use this same process, shooting an Ice Arrow or three to get over to the GREEN platform (using the Deku Mask), then wear the Zora Mask to jump to the platform. Push/Pull the switch to make the water begin flowing through the GREEN pipes. You can sink to the bottom of this room to stock up on Arrows and more likely Magic if you need to. If the Desbreko causes any problems, simply swim through it while holding .

Moving Platforms (?)
Back in the central room, jump into the water, which is now flowing the opposite direction (as I showed a moment ago - scroll up). There's only two paths we can take, middle and bottom. The GREEN pipes are now flowing into the middle path, so take that one. Stop swimming with it and sink down by pressing B before you get to the end, or else you might hit the Spike mines at the end. =(

Kill the Skullfish if they cause any problems, then head over to the platform in the northwest corner of the room. Wait for the rising platform to sink down into the water and hop onto it. When it raises up, jump across the turning gear and onto the next platform that's going back and forth. At this point, you can turn off to the right where you'll see a secret alcove. Use the Hookshot on either the torch or the chest and open it to find the tenth Stray Fairy.

Hop back into the water and get back up the same way, jumping on the platform, jumping across to the next one, then finally climbing onto the ledge. Circle around and we have a little puzzle. You'll see water is flowing onto the waterwheel and making it spin, so let's fix that. Shoot the water with an Ice Arrow to make the waterwheel stop spinning and gaining us a platform to walk on. Nice. This will allow us to access the next door, but before you head through it, there's another Stray Fairy we can get. Face to the north and you'll see an alcove with a large chest in it. To get there, walk on the now stationary platform and use it to climb onto the waterwheel itself. Climb up onto the very edge of it and use the Hookshot on the chest, which you can open to find the eleventh Stray Fairy.

Hop down onto the platform directly below you and work your way to the door. NOTE: If you fall down at any point, you're going to have to shoot the frozen waterfall with a Fire Arrow to make the platforms move again, allowing you to climb back up again.

Second Green Switch - See-Saw Room (?)
As soon as you enter, hop down. The first see-saw thing you come to, hop into the water on the raised side and sink down with the Zora Mask. Swim (ram) into the barrel underwater to find the twelfth Stray Fairy. Float back up and stand on the lower part of the middle see-saw in the room. Shoot a Fire Arrow at the frozen water above the opposite side, causing water to flow down on it and raise you up. Hop over to the next one and repeat this same process, which will raise you up to the highest point. Jump over to the GREEN platform and push/pull the switch and allow water to continue flowing through the GREEN pipes.

Before hoping down, there's something else we can snag. If you look to the south end of the room, there's an enclosed area that we can reach by climbing on top of the GREEN pipes. From atop the GREEN platform, slap on the Zora Mask and use the Double Cutters to kill the Real Bombchu. Run along the green pipe and climb up at the end (with the added height of the Zora Mask) and run off to the right. Hop down into the enclosed area and use the Hookshot on the chest, opening it to find the thirteenth Stray Fairy.

Drop down and kill the ChuChus to stock back up on goodies, then use the first see-saw that we haven't used yet, shooting a Fire Arrow at the frozen water to make it lift you up to the final platform. Exit through the door, which takes you back to the Map Room. Put on the Zora Mask and swim back to the central chamber.
9.5 Gyorg
Total Life

Pieces of Heart
31/52
Items:
??????
New Enemies:
??????


Room (?)
There's only one room left. With the GREEN pipes finally flowing into the bottom path, take it to find the room with the Boss Door. Before we do that though, there's two things we can do real quick. Swim over to the right side of this room where you'll find the exit back into the central chamber. In this path is the fourteenth Stray Fairy. Sink down and hit it with your Double Cutters to break the bubble, then swim through it to get it. Reenter the bottom path to get back to this room, then float up to the surface. You'll see directly under the central platform is the fifteenth Stray Fairy. In order to get it, go stand on top of the GREEN pipe right where it's coming out of the water. From here, you can turn right and shoot the bubble with an Arrow. Wear the Great Fairy's Mask to reel it in.

#14 In a bubble at the exit of this room.
#15 Under the GREEN platform. Shoot it with an arrow and wear the Great Fairy Mask.

Gather any goodies from the jars under the water, this is your last chance to gather stuff. Follow the GREEN pipe the rest of the way and push/pull the GREEN switch to allow the water to flow through the final stretch. Wait for the water pump just ahead to be low and jump onto it, using it to reach the Boss Door.

Gargantuan Masked Fish
GYORG
Tatl:
If you go near it now, you'll be
eaten! Aim at it from afar to
weaken it!
Attacks:
  Jumps over platform
  Ramps into platform
  Contact
  Chomp chomp
  Piranha fish, AHHH!
Threat:
Received:
  - Heart Container
  - Gyorg's Remains

The Platform
This battle involves running back and forth between the central platform and swimming around with the Zora Mask. Anytime you are in the water, Gyorg will charge at you and chew you up, dealing massive damage. That being said, you want to stay out of the water as much as possible.

While on the platform, Gyorg will back up and rush towards it. If you're near the edge, it'll ram into it, trying to knock you over the side so it can nom your face. If you're more towards the center, it'll jump over and try to push you off with its fins. Either way, swerve to avoid these attacks and quickly face towards it when it gets back in the water.

Stunning Gyorg
There are extra jars on the platform that have arrows, a clue that you need to target Gyorg (follow the bubbles to find its location) and shoot it to stun it. Alternatively, you can charge up the Double Cutters with the Zora Mask, but they take longer and don't have the range. One word of advice though: if Gyorg is already backed up, (getting ready to charge,) get back and wait a moment before trying to shoot it, since otherwise you could miss and essentially knock yourself into the water. Anyway, once you've hit it, it'll go limp under the water for several moments. Quickly put on the Zora Mask and swim down there.

Dishing Out The Pain
You can press B to sink down and slash it with your fins, but you do extra damage by using the Electrical Barrier () instead. Because of this, I recommend putting on the Zora Mask, jumping into the water and holding immediately so you begin swimming. Swim next to Gyorg while holding , damaging it, and immediately begin swimming back to the platform. If you're a really good swimmer, you can try doing a dolphin jump out of the water and onto the platform, but if you miss and hit the platform, it'll take you even longer to climb up. Get out of the water as soon as possible!

Risky Zora Maneuvers: Don't Do It!
Alternatively, you can stay under the water charging up the Double Cutters or ramming into the side of Gyorg while using the Electric Barrier to hopefully stun it this way. This is very dangerous, since, once Gyorg begins charging to take a bite out of you, it's invulnerable. I highly recommend against this strategy, since you'll most likely take loads of damage.

Fishies
After awhile, Gyorg will spit out a ton of... baby Gyorg fish I suppose you could call them... which act a lot like piranhas. They can be easily defeated by swimming through them with the Electric Barrier. I recommend stunning Gyorg with an Arrow, then killing the fishies, then run back to the platform - they drop Recovery Hearts, so it's a good chunk of potential life that you can easily snag. Repeat the same steps to steadily deal damage to Gyorg and eventually defeat it. There are additional Arrows in the jars on the platform and Magic in the jars underwater in each corner of the room.
 
Summary:
Stand on the platform, follow the bubbles, target the fish, shoot it with an Arrow to stun it. Put on the Zora Mask, jump off the platform, holding to swim into Gyrog while holding the R button. Immediately swim back to the platform. Repeat. Eventually summons little fishies, which you can also kill with .
 
After Gyorg has been defeated, *whew*, swim over to one of the corners underwater and smash the jar to restore your Magic. Go back to the platform and snag yourself the Heart Container followed by Gyorg's Remains. You'll then witness antoher short clip with our next Guardian. "Help our friend." is what it says. They must mean the final Giant, right?
9.6 Stray Fairy Stuff
Total Life

Pieces of Heart
31/52
Items:
??????
New Enemies:
??????