I would love any of the really memorable themes to return, but really I think that's for my own personal musical enjoyment than anything. I would love the heroic Hyrule Castle theme from ALttP, the Windmill Hut from OoT, even the Temple theme from AoL -- especially if all of these were to be performed by a live orchestra.
Realistically though, I would prefer them to score areas of the game with appropriate music. I know many were diappointed (including myself) to not hear that classic Gerudo theme in TP, but really when I thought about it the music included really helped define the lanscape better. I think in OoT the theme was written to reflect the Gerudo tribe, but in TP the theme was a bit more desolate to reflect the landscape that was devoid of the tribe. It also helped define it to be the location of the Arbiter's Grounds with the haunting vocals. I think the upbeat Gerudo Valley OoT mix would have taken something away from the TP Gerudo Desert.
Essentially, what I'm saying is if the scene fits the piece, then yes include it in SS or some variation thereof, but if the scene would be better suited for a different piece then I think it should be rescored instead.