I just don't understand how one can place ALttP after an un-flood of any kind, it's like forgetting everything that happened. Hyrule just goes back to normal, the MS is found and given a pedestal and placed in the Lost Woods, Lake Hylia just goes back to being Lake Hylia, another desert emerges, and a new Kakariko Village exists again? It just doesn't make too much sense to me. The only Hyrule-based games that could possible occur after ST is LoZ and AoL, seeing as how messed up and completely different their overworlds are, which would make sense after a flood of that magnitude washes away. Heck, AoL's map has a ton of water, none of it being Lake Hylia.
I'm also sorry if this has all been said, I quickly skimmed the other posts, and didn't pay too much attention.