Of course, Not Take Mirror loves the "Not Take Mirror" scene. Actually, that scene was cool.
I liked a ton. The scene in ST where Link and Zelda watch the Force Gem appear from the boss's body, and it enters the pedestal to restore tracks is one of my favorites, cinema-wise. That was cool, especially since it was longer and more intricate than any other of its kind. Also, the cutscene linked to it, where a blue light goes along the tracks, making some new ones and turning into electricity that pulls a piece of the tower back. You can see the spirit's power negating Malladus's. The final rendition of that is my favorite, because obviously the tower is fully re[paired and it's such a great feeling to know that your work is almost done.
Also, the scene in TP where Midna sacrifices herself for you and Zelda... it was beautiful.
The scene in SS in which Impa glares at Link, after the Earth Temple, was great. I felt angry and frustrated...and helpless... like I had failed. Which I had.
But my absolute favorite is the scene in ST where Malladus is fully reborn in Zelda's body, and of course where Zelda gets it back and Byrne dies. Also, Cole dies in that scene, and it was quite a nice last hurrah for him. "You can say there's no such thing as karmaaa...[/sing]" Sorry, it's a Z-Talk reference.