I'm enjoying this too much.
There's been a few grammar things I've caught, and I can point them all out if you want. I did want to bring this up:
“Navi, your okay right he didn’t do anything to you,” Link focused his attention on her quickly ensuring that she was okay.
This feels a little...
This is pretty neat! You're taking things I've never cared for (LinkxNavi, high school AUs) and really made something good out of them! Can't wait to see what's next!