1. The official timeline is still closer to the orifginal intent. OoT may not be the IW, but it still deals with it by exploring events surrounding it such as the origin of Ganon(dorf) and the transformation of the Sacred Realm into the Dark World(the JP version has Zelda saying that Ganondorf...
So, some issues:
1. The developers said that OoT was a prequel to ALttP even after OoT was released. https://www.zeldadungeon.net/Zelda-Developer-Timeline-Quotes.php
Satoru Takizawa: ''In the previous Zeldas, Ganon has always been a pig. Though we wanted to do something differently this time...