I'm going to add another character to my list, Zelda from Spirit Tracks. Oftentimes Zeldas from various games get kind of clumped together as generic "Zelda". But I especially like the one from ST. She comes off a little naive at first, not used to leaving the palace or seeing anything "scary"...
Revali. There's a sad amount of Revali hatred (most of it justified, but still) I actually like him as a character.
After that, Moe the moblin from WW. I'm pretty sure a lot of people enjoy this quest and find it funny, but nobody ever talks about him. This guy had my full support and...