Ocarina of time (item)> Wind Waker (item)> King of Red Lions> Great Sea> The Legend of Zelda: Phantom Hourglass> Characters in The Legend of Zelda: Phantom hourglass> Nyeve> Prince of Red Lions... Phew. Next go from ReDead to Superb Soup.
Well when you [SPOILER] Go back in time to the temple of time I always assumed that that was the same from OOT and a forest overgrew it, going back to SS the trees are probably naturally there and the hylians cut it down but it eventually came back. As for WW the royal family probably built...